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Okay, here is my idea about how the ending should have been, or how it could still be, since it incorporates the indoctrination theory. It was inspired by several things I've read, heard, watch online (most notably this guys videos), so I'm not claiming that it's 100% original or anything.
So let's follow the indoctrination theory line (even though I would rather change the Earth battles into a Siege of Denerim type of battle from Dragon Age Origins), Shepard successfully fights indoctrination, and wakes up to one of her (I will keep using the female pronounce, cos I play FemShep) squad mates and Anderson trying to wake her up. Your other squad mate either died or gets knocked out (not sure about what kind of mechanic to you to determine th…Read more >