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I have had a hard time believing that the third option was also an indoctrination choice. In fact I believe both the "Destroy" option and the "Control" options offered by the catalyst-AI were the indoctrination choices. The "Anderson" option because as the AI had said, doing so would eliminate all artificial life in the galaxy, but the children of the organics would soon repeat the mistakes of their parents and create them once again. Thereby repeating the cycles once again. Choosing the "TIM" option would eliminate the free will of all AI, Reducing all forms of artificial life to no more than working appliances. If you fought for the existance of the Geth in the battle with the Quarians then this wasn't the option for you either.
In fact …Read more >